Quantifying electronic effects in enzyme catalysis

We have developed two new methods that help to quantify when electronic effects matter in enzyme active sites to help guide a systematic approach to multi-scale modeling (i.e., QM/MM simulation). First, in the charge shift analysis (CSA) method, we probe the reorganization of electron density when core active site residues are removed completely, as determined by large-QM region QM/MM calculations.

Paradoxical meta-GGA behavior in TM complexes

Prediction of spin-state ordering is essential for understanding catalytic activity and designing functional materials. Semilocal DFT can suffer from self-interaction errors that give rise to systematic bias for low-spin states. We recently identified surprising behavior from incorporation of higher-order terms (i.e., in a meta-GGA).

Dynamics of depolymerization pathways

Lignocellulosic biomass is an abundant, rich source of aromatic compounds, but direct utilization of raw lignin has been hampered by both the high heterogeneity and variability of linking bonds in this biopolymer. Ab initio steered molecular dynamics (AISMD) has emerged both as a fruitful direct computational screening approach to identify products that occur through mechanical depolymerization (i.e., in sonication or ball-milling) and as a sampling approach.

Hello Holidays!

As the Fall semester is winding down, it's getting festive here in the Kulik group!


About Us

The Kulik group focuses on the development and application of new electronic structure methods and atomistic simulations tools in the broad area of catalysis.

Our Interests

We are interested in transition metal chemistry, with applications from biological systems (i.e. enzymes) to nonbiological applications in surface science and molecular catalysis.

Our Focus

A key focus of our group is to understand mechanistic features of complex catalysts and to facilitate and develop tools for computationally driven design.

Contact Us

Questions or comments? Let us know! Contact Dr. Kulik: