Calculating Hubbard U for periodic systems

Tuesday, November 15, 2011

Periodic systems have always been the primary application for DFT+U. The original utility of DFT+U was largely observed in improving descriptions of band gaps and recovering insulating behavior in materials that standard approximations to DFT make metallic. Previously, I showed you how to calculate the Hubbard U for isolated single-site and multiple-site transition metal complexes as well as how to troubleshoot general challenges associated with DFT+U calculations.   Today we’ll look at how to calculate the linear-response U in a prototypical solid state system: bcc iron.

 

Following the procedure outlined in [1], we start with a 2x2x2 supercell of bcc Fe and perturb a single Hubbard atom in the environment of the other iron sites.  We use a 4x4x4 k-point mesh appropriate for the supercell and a 35 Ry/420 Ry wavefunction and density cutoffs, but higher cutoffs and more k-points may be needed for production runs. I’ll also be using a PBE iron pseudopotential with 3s and 3p states in the valence, which you can download here.

 

The lattice parameter is set to 10.82 au (or twice the experimental unit cell size since this is a supercell).

 

We have eight iron sites in our cell (ordering is arbitrary):

Fe1 0.0000 0.0000 0.0000

Fe2 0.5000 0.0000 0.0000

Fe3 0.0000 0.5000 0.0000

Fe4 0.0000 0.0000 0.5000

Fe5 0.5000 0.5000 0.0000

Fe6 0.0000 0.5000 0.5000

Fe7 0.5000 0.0000 0.5000

Fe8 0.5000 0.5000 0.5000

 

We identify a single Hubbard atom and apply a potential shift, alpha, to the 3d manifold. We then measure the bare and self consistent response for both the Hubbard atom and the neighboring atoms.  We could repeat this procedure for all iron atoms, but instead my script simply reconstructs the response matrix using the symmetry between iron sites.

 

The response matrix we wish to invert is either 8x8 or 9x9 if you include a row and column for background states.  In either case, these scripts require scipy for the matrix inversion, or you may also use your own preferred tool for matrix inversion separately. 

 

The resulting response matrices are as follows:

 

Bare

 

 

 

 

 

 

 

 

 

 

Converged

 

 

 

 

 

 

 

 

 

 

where an additional background row or column is simply the reverse of the sum of the elements in that row so that the result is equal to zero.

 

The symmetry of the sites is evident from the pattern in the response matrices. Inverting these matrices gives a U = 2.9 eV for bcc iron. Note: this U is higher than the 2.2 eV value estimated in [1], potentially due to differences in the pseudopotential used between the two approaches and the number of k-points.

 

Here are the files that you’ll need in order to run these calculations (in a zip):

  1.  jobrun.py — skeleton script generates input files and runs jobs. 

  2. variables.py — you should change these job and cluster variables!  

  3. libraries.py — standard variables that should not be changed. 

Coming soon (or you can write your own routines): 

  1. response.py — constructs response matrix and calculates U0.

 

I hope that this tutorial has helped you to better understand how to converge multiple low-lying states in Quantum-ESPRESSO and PWscf. Please email me if you have any additional questions not answered here! 

 

References

[1] M. Cococcioni and S. de Gironcoli.  Phys. Rev. B. 71, 035105 (2005).

About Us

The Kulik group focuses on the development and application of new electronic structure methods and atomistic simulations tools in the broad area of catalysis.

Our Interests

We are interested in transition metal chemistry, with applications from biological systems (i.e. enzymes) to nonbiological applications in surface science and molecular catalysis.

Our Focus

A key focus of our group is to understand mechanistic features of complex catalysts and to facilitate and develop tools for computationally driven design.

Contact Us

Questions or comments? Let us know! Contact Dr. Kulik: