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2
Insights into the Stability of Engineered Mini-Proteins from Their Dynamic Electronic Properties
An understanding of protein stability requires capturing dynamic rearrangements and coupled properties over long lengthscales. …
Adam H Steeves
,
Heather J. Kulik
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DOI
ChemRxiv
Non-Native Anionic Ligand Binding and Reactivity in Engineered Variants of the Fe(II)- and α-Ketoglutarate-Dependent Oxygenase, SadA
Mononuclear non-heme Fe(II)- and alpha-ketoglutarate dependent oxygenases (FeDOs) catalyze site-selective C-H hydroxylation. Variants …
Natalie H. Chan
,
Christian A. Gomez
,
Vyshnavi Vennelakanti
,
Qian Du
,
Heather J. Kulik
,
Jared C. Lewis
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DOI
ChemRxiv
Endohedrally Functionalized Metal–Organic Cage-Cross-Linked Polymer Gels as Modular Heterogeneous Catalysts
The immobilization of homogeneous catalysts onto supports to improve recyclability while maintaining catalytic efficiency is often a …
Christopher M. Brown
,
David J. Lundberg
,
Jessica R. Lamb
,
Ilia Kevlishvili
,
Denise Kleinschmidt
,
Yasmeen S. Alfaraj
,
Heather J. Kulik
,
Maria Francesca Ottaviani
,
Nathan J. Oldenhuis
,
Jeremiah A. Johnson
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Using Computational Chemistry to Reveal Nature's Blueprints for Single-Site Catalysis of C–H Activation
The challenge of activating inert C–H bonds motivates a study of catalysts that draws from what can be accomplished by natural enzymes …
Aditya Nandy
,
Husain Adamji
,
David Kastner
,
Vyshnavi Vennelakanti
,
Azadeh Nazemi
,
Mingjie Liu
,
Heather J. Kulik
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DOI
Mechanistic Studies of a Skatole-Forming Glycyl Radical Enzyme Suggest Reaction Initiation via Hydrogen Atom Transfer
Gut microbial decarboxylation of amino acid-derived arylacetates is a chemically challenging enzymatic transformation which generates …
Beverly Fu
,
Azadeh Nazemi
,
Benjamin J. Levin
,
Zhongyue Yang
,
Heather J. Kulik
,
Emily P. Balskus
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DOI
Exploiting Ligand Additivity for Transferable Machine Learning of Multireference Character Across Known Transition Metal Complex Ligands
Accurate virtual high-throughput screening (VHTS) of transition metal complexes (TMCs) remains challenging due to the possibility of …
Chenru Duan
,
Adriana J. Ladera
,
Julian C.-L. Liu
,
Michael G. Taylor
,
Isuru Ariyarathna
,
Heather J. Kulik
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DOI
arXiv
Machine learning models predict calculation outcomes with the transferability necessary for computational catalysis
Virtual high-throughput screening (VHTS) and machine learning (ML) have greatly accelerated the design of single-site transition-metal …
Chenru Duan
,
Aditya Nandy
,
Husain Adamji
,
Yuriy Roman-Leshkov
,
Heather J. Kulik
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DOI
arXiv
Roadmap on Machine Learning in Electronic Structure
In recent years, we have been witnessing a paradigm shift in computational materials science. In fact, traditional methods, mostly …
Heather J. Kulik
,
Thomas Hammerschmidt
,
Jonathan Schmidt
,
Silvana Botti
,
Miguel A. L. Marques
,
Mario Boley
,
Matthias Scheffler
,
Milica Todorović
,
Patrick Rinke
,
Corey Oses
,
Andriy Smolyanyuk
,
Stefano Curtarolo
,
Alexandre Tkatchenko
,
Albert Bartok
,
Sergei Manzhos
,
Manabu Ihara
,
Tucker Carrington
,
Jörg Behler
,
Olexandr Isayev
,
Max Veit
,
Andrea Grisafi
,
Jigyasa Nigam
,
Michele Ceriotti
,
Kristoff T Schütt
,
Julia Westermayr
,
Michael Gastegger
,
Reinhard Maurer
,
Bhupalee Kalita
,
Kieron Burke
,
Ryo Nagai
,
Ryosuke Akashi
,
Osamu Sugino
,
Jan Hermann
,
Frank Noé
,
Sebastiano Pilati
,
Claudia Draxl
,
Martin Kuban
,
Santiago Rigamonti
,
Markus Scheidgen
,
Marco Esters
,
David Hicks
,
Cormac Toher
,
Prasanna Balachandran
,
Isaac Tamblyn
,
Stephen Whitelam
,
Colin Bellinger
,
Luca M. Ghiringhelli
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Influence of the Greater Protein Environment on the Electrostatic Potential in Metalloenzyme Active Sites: The Case of Formate Dehydrogenase
The Mo/W-containing metalloenzyme formate dehydrogenase (FDH) is an efficient and selective natural catalyst that reversibly converts …
Azadeh Nazemi
,
Adam H. Steeves
,
David Kastner
,
Heather J. Kulik
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DOI
ChemRxiv
What's Left for a Computational Chemist To Do in the Age of Machine Learning?
Machine learning (ML) has become a central focus of the computational chemistry community. I will first discuss my personal history in …
Heather J. Kulik
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DOI
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